pathpy
1.0
pathpy is an OpenSource python package for the modeling and analysis of pathways and temporal networks using higher-order and multi-order graphical models
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Here is a list of all documented class members with links to the class documentation for each member:
- _ -
__init__() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.MarkovSequence.MarkovSequence
,
pathpy.MultiOrderModel.MultiOrderModel
,
pathpy.Paths.Paths
,
pathpy.TemporalNetwork.TemporalNetwork
__str__() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.MultiOrderModel.MultiOrderModel
,
pathpy.Paths.Paths
,
pathpy.TemporalNetwork.TemporalNetwork
- a -
activities :
pathpy.TemporalNetwork.TemporalNetwork
activities_sets :
pathpy.TemporalNetwork.TemporalNetwork
add() :
pathpy.Log.Log
addEdge() :
pathpy.TemporalNetwork.TemporalNetwork
addPath() :
pathpy.Paths.Paths
addPathTuple() :
pathpy.Paths.Paths
- b -
BetweennessCentrality() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.Paths.Paths
BetweennessPreference() :
pathpy.Paths.Paths
- c -
ClosenessCentrality() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.Paths.Paths
- d -
DEBUG :
pathpy.Log.Severity
degrees() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
dof_ngrams :
pathpy.HigherOrderNetwork.HigherOrderNetwork
dof_paths :
pathpy.HigherOrderNetwork.HigherOrderNetwork
- e -
ecount() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.TemporalNetwork.TemporalNetwork
edges :
pathpy.HigherOrderNetwork.HigherOrderNetwork
ERROR :
pathpy.Log.Severity
estimateOrder() :
pathpy.MarkovSequence.MarkovSequence
,
pathpy.MultiOrderModel.MultiOrderModel
EvCent() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
expandSubPaths() :
pathpy.Paths.Paths
- f -
factorial() :
pathpy.MultiOrderModel.MultiOrderModel
filterEdges() :
pathpy.TemporalNetwork.TemporalNetwork
filterPaths() :
pathpy.Paths.Paths
fitMarkovModel() :
pathpy.MarkovSequence.MarkovSequence
fromTemporalNetwork() :
pathpy.Paths.Paths
- g -
getAdjacencyMatrix() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getAIC() :
pathpy.MarkovSequence.MarkovSequence
getAlgebraicConnectivity() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getBIC() :
pathpy.MarkovSequence.MarkovSequence
getContainedPaths() :
pathpy.Paths.Paths
getDegreesOfFreedom() :
pathpy.MultiOrderModel.MultiOrderModel
getDistanceMatrix() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.Paths.Paths
getDistanceMatrixFirstOrder() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getDoF() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getEigenValueGap() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getEntropyGrowthRateRatio() :
pathpy.Paths.Paths
getFiedlerVectorDense() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getFiedlerVectorSparse() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getInterEventTimes() :
pathpy.TemporalNetwork.TemporalNetwork
getInterPathTimes() :
pathpy.TemporalNetwork.TemporalNetwork
getLaplacianMatrix() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getLayerLikelihood() :
pathpy.MultiOrderModel.MultiOrderModel
getLeadingEigenvector() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getLikelihood() :
pathpy.MarkovSequence.MarkovSequence
,
pathpy.MultiOrderModel.MultiOrderModel
getNodeNameMap() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getNodes() :
pathpy.Paths.Paths
getObservationLength() :
pathpy.TemporalNetwork.TemporalNetwork
getSequence() :
pathpy.Paths.Paths
getShortestPaths() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.Paths.Paths
getSlowDownFactor() :
pathpy.Paths.Paths
GetTemporalBetweenness() :
pathpy.TemporalNetwork.TemporalNetwork
GetTemporalBetweennessInstantaneous() :
pathpy.TemporalNetwork.TemporalNetwork
GetTemporalCloseness() :
pathpy.TemporalNetwork.TemporalNetwork
GetTemporalClosenessInstantaneous() :
pathpy.TemporalNetwork.TemporalNetwork
getTransitionMatrix() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
getUniquePaths() :
pathpy.Paths.Paths
- h -
HigherOrderNodeToPath() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
HigherOrderPathToFirstOrder() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
- i -
INFO :
pathpy.Log.Severity
- l -
layers :
pathpy.MultiOrderModel.MultiOrderModel
likeliHoodRatioTest() :
pathpy.MultiOrderModel.MultiOrderModel
- m -
maxOrder :
pathpy.MultiOrderModel.MultiOrderModel
min_severity :
pathpy.Log.Log
- n -
nodes :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.TemporalNetwork.TemporalNetwork
- o -
ObservationCount() :
pathpy.Paths.Paths
order :
pathpy.HigherOrderNetwork.HigherOrderNetwork
ordered_times :
pathpy.TemporalNetwork.TemporalNetwork
output_stream :
pathpy.Log.Log
- p -
P :
pathpy.MarkovSequence.MarkovSequence
PageRank() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
paths :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.MultiOrderModel.MultiOrderModel
,
pathpy.Paths.Paths
pathToHigherOrderNodes() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
projectPaths() :
pathpy.Paths.Paths
- r -
readEdges() :
pathpy.Paths.Paths
readFile() :
pathpy.Paths.Paths
,
pathpy.TemporalNetwork.TemporalNetwork
reduceToGCC() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
- s -
separator :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.Paths.Paths
sequence :
pathpy.MarkovSequence.MarkovSequence
setMinSeverity() :
pathpy.Log.Log
setOutputStream() :
pathpy.Log.Log
ShuffleEdges() :
pathpy.TemporalNetwork.TemporalNetwork
sources :
pathpy.TemporalNetwork.TemporalNetwork
states :
pathpy.MarkovSequence.MarkovSequence
successors :
pathpy.HigherOrderNetwork.HigherOrderNetwork
summary() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.MultiOrderModel.MultiOrderModel
,
pathpy.Paths.Paths
,
pathpy.TemporalNetwork.TemporalNetwork
- t -
T :
pathpy.MultiOrderModel.MultiOrderModel
targets :
pathpy.TemporalNetwork.TemporalNetwork
tedges :
pathpy.TemporalNetwork.TemporalNetwork
testNetworkAssumption() :
pathpy.MultiOrderModel.MultiOrderModel
time :
pathpy.TemporalNetwork.TemporalNetwork
TIMING :
pathpy.Log.Severity
totalEdgeWeight() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
- v -
vcount() :
pathpy.HigherOrderNetwork.HigherOrderNetwork
,
pathpy.TemporalNetwork.TemporalNetwork
VisitationProbabilities() :
pathpy.Paths.Paths
- w -
WARNING :
pathpy.Log.Severity
Generated on Wed Mar 1 2017 10:39:10 for pathpy by
1.8.6